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A Scientific Approach To Biotechnology

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A Scientific approch to biotechnology between_pic_1 Biotechnology between_pic_2 Biotechnology Help
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Understanding Biotechnology


What is Biotechnology

Overview of Biotechnology

  Then and Now of Biotechnology
 

History of Biotechnology

  Gene Technology
  What is a gene
  Gene Technology Techniques
  Genetic modification myths
  Genes code for proteins
  What is DNA
  Where is DNA
  The Full Set
  What does DNA look like
  What does DNA work
  DNA Unknown

Why do we do biotechnology?


  Why do we do biotechnology?
  Biotechnology for ourselves

Biotechnology for the environment

Biotechnology for food and agriculture

How do you do biotechnology?

  How do you do biotechnology
Finding the gene you want
  Cutting and pasting genes
  Moving genes
  Reading and interpreting genes
  Cloning a gene
  Cloning plants
  Cloning animals
Biotechnology Applications

  Human Uses
  Fighting infectious diseases
  Antibiotics
  Producing human products
  Reproductive technologies
  The human genome project
  Genetic disorders
  Gene therapy
  Cloning
  Stem cells
  Transplantation
  DNA profiling
  Environment
  Biological control of pests
  Protecting threatened species
  Resurrecting extinct species
  Cleaning up and managing
  Researching new products
  Food and Agriculture
  Feed Me
  A problem with weeds
  A problem with insects
  Other reasons to modify crops
  The international scene
  Genetically modified food labeling
  Health and Medical
  Biotechnology in medicines
  Clinical trials
  Gene therapy
  Genes and cancer
  What are ethics
Benefits & Risks of Biotechnology

  Arguments for and against gene
  A nutritionist's view on GM foods
  Balance sheet 2020
  Sustaining the Food supply
Biotechnology Resources

  Ethics of biotechnology
  Conferences and events
  Forums and Communities
  Biotechnology Websites
  Glossary of terms
   
 
 

 

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The Human Genome Project

  The Human Genome Project is an international collaboration which officially began in 1990. The expected project completion date was 2005, but rapid technological advances saw the completion of this venture four years ahead of schedule in 2001.

The aims of the project were to:

  • determine the sequences that comprise human DNA
  • identify all of the genes in human DNA
  • store this information in databases and improve analytical tools
  • transfer technologies gained from the project to private industry (eg biotechnology companies), to develop new medical applications
  • address the ethical, legal and social issues that may arise from the project
 
 

What have we found?

  The sequence of a ‘working draft’ of the human genome was published in the science journals Science and Nature in early 2001. This was a special event, as the public and private research efforts were publishing their results at the same time.

The final draft was completed in 2003, and the final papers were published in 2006. However, the data will be analysed for many years to come.

Analysis of the draft sequence revealed a vast amount of information, including:

  • the average human gene consists of 3000 nucleotide bases, but sizes vary greatly
  • the largest known human gene has 2.4 million bases
  • chromosome 1 has the most genes (2968) and the Y chromosome has the least (231)
  • the order of 99.9% of nucleotide bases is exactly the same in all people
  • the functions of more than 50% of discovered genes remain unknown
  • less than 2% of the genome encodes for the production of proteins
  • gene-rich areas of the genome are mostly made up of G and C bases, whereas gene-poor regions are mostly made up of A and T bases
  • at least 50% of the genome consists of repetitive base sequences that appear to have no direct function, but over time reshape the genome by
    • rearranging it
    • creating new genes
    • modifying and reshuffling existing genes.

Much is still unknown about our genome. Some of the things we still don’t fully understand are:

  • exact gene number, locations and functions
  • how genes are regulated
  • the amount, distribution, information content and functions of ‘noncoding’ DNA (DNA that does not code for a protein product)
  • how gene expression, protein expression and post-translational events are orchestrated
  • how genes and proteins are evolutionarily conserved amongst different organisms
  • how genetic variation among individuals is correlated to health and disease.
  How many genes did you say?
  • The size of genomes differs from one organism to the next. The human genome contains about 3.1 billion base pairs and about 30,000 genes.
  • The largest known genome belongs to a microscopic amoeba, Amoeba dubia, closely followed by the lungfish and the Easter lily.
  • Three quarters of the Japanese pufferfish's 31,000 genes have direct human counterparts
 
 

Who owns it?

  The Human Genome Project was a truly collaborative project. Researchers from across the world were involved. The actual sequencing was conducted at numerous universities and research centres throughout the United States, the United Kingdom, France, Germany, Japan and China.

A rough draft of the sequence was made public on 26 June 2000, with the final draft completed in April 2003. The final papers were published in 2006. The sequence is made available free of charge to academic researchers, and new data on the genome is posted every 24 hours.

 
 

What do we do with it?

  As the Human Genome Project continues to provide information about our genes, more opportunities for genetic testing will become available.

Genetic testing methods identify the presence or absence of a particular allele, or form of a gene, in an individual. Testing a whole population for the presence of particular alleles is called genetic screening.

The draft human genome sequence has aided the discovery of some genes and single nucleotide polymorphisms (SNPs) associated with disease. SNPs (pronounced ‘snips’) are a common form of DNA variation where an alteration has occurred to a single base. If the SNP is in a gene, it can sometimes disrupt the gene's function.

Over 30 genes have been identified and linked to conditions such as deafness, blindness, breast cancer and muscle disease. DNA sequences have been associated with various cancers, arthritis, diabetes and cardiovascular heart disease. This type of information is enormously useful, because it provides specific targets for the development of new diagnostic tests and treatments.

We now know a lot more about our genes and how they affect our susceptibility to disease. It can be very tempting to think that our genes are responsible for everything about us. However, the way we think and behave are shaped by more than just our genetic code. Our environment, our society, including the country we live in, the food we eat, the way we view the world and how we look after our health, all affect our behaviour as much as the genes we were born with.

 
 

Comparative genomics

  Now that we have a map of the human genome, we have to learn how to read it and figure out which gene does what.

Of the estimated 30,000 genes in the human genome, we have very little idea about what each one does. One way of studying genes is to directly compare the entire genome with other organisms. This is called comparative genomics.

The human genome is extremely complicated. By comparing it with the genomes of other species, such as mice or fruit flies, we gain insights into the similarities and differences and can learn more about the function of human genes.

The organisms scientists are using in comparative genomics are known as model organisms. That is, they provide a model against which the human genome can be studied. It doesn't matter that we have two legs and mice have four, or that we have opposable thumbs and mice have claws. On a DNA level, humans and other organisms aren't that different. On average, the DNA sequence of mouse and human genes is 85% similar.

Since 1995, the genomes of more than 180 organisms have been sequenced. These include chimpanzee, mouse, rat, pufferfish, fruit fly, sea squirt, roundworm, baker's yeast, the bacterium Escherichia coli, kangaroo, honey bee, dog and chicken.

In 2008, the platypus genome was sequenced by Australian and American researchers. Analysis of the genome showed genetic similar ities to reptiles, fish and birds, giving clues to the evolutionary origins of this egg-laying mammal.

For updated information on completed genomes:

http://www.genomenewsnetwork.org

 
 

Wallaby genome project

  Australia is adding to the global genome research effort by sequencing the genome of the tammar wallaby (Macropus eugenii), an Australian marsupial.

Why the wallaby? To find out important genes that make us human, we compare our genome with that of other animals. Mammals such as the mouse are too similar, while animals such as chickens are too different. Marsupials such as the tammar wallaby are perfectly in between.

Marsupials are particularly valuable ‘alternative mammals’ for comparative studies. They have a number of unique features that can help scientists better understand the mechanisms controlling fertility, seasonal breeding, pregnancy and lactation in all mammals.

Sequencing the wallaby genome has the potential to provide benefits in human medicine and agriculture. Benefits will also come from applying genome-scale information to conservation, ecology and pest management in a variety of marsupial species.

For more information on the Wallaby Genome Project, go to:

http://www.agrf.org.au/news-item-2.html

http://kangaroo.genomics.org.au/public/

 
 
   
   
   
 
   
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